Ignore:
Timestamp:
Apr 3, 2023, 1:34:02 PM (15 months ago)
Author:
caparsons <caparson@…>
Branches:
ADT, ast-experimental, master
Children:
1689ecf
Parents:
48fda7a
Message:

Big cleanup pass. Updated style to get rid of almost all macros. Reformated thesis to match current template. Added newlines at the end of all sentences. Reworked terminology and acronyms to fit new glossary format

File:
1 edited

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  • doc/theses/colby_parsons_MMAth/thesis.tex

    r48fda7a r9a5a2cd  
    1 % requires tex packages: texlive-base texlive-latex-base tex-common texlive-humanities texlive-latex-extra texlive-fonts-recommended
    2 
     1%======================================================================
     2% University of Waterloo Thesis Template for LaTeX
     3% Last Updated August 2022
     4% by IST Client Services,
     5% University of Waterloo, 200 University Ave. W., Waterloo, Ontario, Canada
     6% FOR ASSISTANCE, please send mail to helpdesk@uwaterloo.ca
     7
     8% DISCLAIMER
     9% To the best of our knowledge, this template satisfies the current uWaterloo thesis requirements.
     10% However, it is your responsibility to assure that you have met all requirements of the University and your particular department.
     11
     12% Many thanks for the feedback from many graduates who assisted the development of this template.
     13% Also note that there are explanatory comments and tips throughout this template.
     14%======================================================================
     15% Some important notes on using this template and making it your own...
     16
     17% The University of Waterloo has required electronic thesis submission since October 2006.
     18% See the uWaterloo thesis regulations at
     19% https://uwaterloo.ca/graduate-studies/thesis.
     20% This thesis template is geared towards generating a PDF version optimized for viewing on an electronic display, including hyperlinks within the PDF.
     21
     22% DON'T FORGET TO ADD YOUR OWN NAME AND TITLE in the "hyperref" package configuration below.
     23% Search for: PDFTITLE, PDFAUTHOR, PDFSUBJECT, and PDFKEYWORDS.
     24% THIS INFORMATION GETS EMBEDDED IN THE FINAL PDF DOCUMENT.
     25% You can view the information if you view properties of the PDF document.
     26
     27% Many faculties/departments also require one or more printed copies.
     28% This template attempts to satisfy both types of output.
     29% See additional notes below.
     30% It is based on the standard "book" document class which provides all necessary sectioning structures and allows multi-part theses.
     31
     32% If you are using this template in Overleaf (cloud-based collaboration service), then it is automatically processed and previewed for you as you edit.
     33
     34% For people who prefer to install their own LaTeX distributions on their own computers, and process the source files manually, the following notes provide the sequence of tasks:
     35 
     36% E.g. to process a thesis called "mythesis.tex" based on this template, run:
     37
     38% pdflatex mythesis     -- first pass of the pdflatex processor
     39% bibtex mythesis       -- generates bibliography from .bib data file(s)
     40% makeindex         -- should be run only if an index is used
     41% pdflatex mythesis     -- fixes numbering in cross-references, bibliographic references, glossaries, index, etc.
     42% pdflatex mythesis     -- it takes a couple of passes to completely process all cross-references
     43
     44% If you use the recommended LaTeX editor, Texmaker, you would open the mythesis.tex file, then click the PDFLaTeX button. Then run BibTeX (under the Tools menu).
     45% Then click the PDFLaTeX button two more times.
     46% If you have an index as well,you'll need to run MakeIndex from the Tools menu as well, before running pdflatex
     47% the last two times.
     48
     49% N.B. The "pdftex" program allows graphics in the following formats to be included with the "\includegraphics" command: PNG, PDF, JPEG, TIFF
     50% Tip: Generate your figures and photos in the size you want them to appear in your thesis, rather than scaling them with \includegraphics options.
     51% Tip: Any drawings you do should be in scalable vector graphic formats: SVG, PNG, WMF, EPS and then converted to PNG or PDF, so they are scalable in the final PDF as well.
     52% Tip: Photographs should be cropped and compressed so as not to be too large.
     53
     54% To create a PDF output that is optimized for double-sided printing:
     55% 1) comment-out the \documentclass statement in the preamble below, and un-comment the second \documentclass line.
     56% 2) change the value assigned below to the boolean variable "PrintVersion" from " false" to "true".
     57
     58%======================================================================
     59%   D O C U M E N T   P R E A M B L E
     60% Specify the document class, default style attributes, and page dimensions, etc.
     61% For hyperlinked PDF, suitable for viewing on a computer, use this:
    362\documentclass[letterpaper,12pt,titlepage,oneside,final]{book}
    4 
    5 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
    6 
    7 % Latex packages used in the document.
     63 
     64% For PDF, suitable for double-sided printing, change the PrintVersion variable below to "true" and use this \documentclass line instead of the one above:
     65%\documentclass[letterpaper,12pt,titlepage,openright,twoside,final]{book}
     66
     67% Some LaTeX commands I define for my own nomenclature.
     68% If you have to, it's easier to make changes to nomenclature once here than in a million places throughout your thesis!
     69\newcommand{\package}[1]{\textbf{#1}} % package names in bold text
     70\newcommand{\cmmd}[1]{\textbackslash\texttt{#1}} % command name in tt font
     71\newcommand{\href}[1]{#1} % does nothing, but defines the command so the print-optimized version will ignore \href tags (redefined by hyperref pkg).
     72%\newcommand{\texorpdfstring}[2]{#1} % does nothing, but defines the command
     73% Anything defined here may be redefined by packages added below...
     74
     75% This package allows if-then-else control structures.
     76\usepackage{ifthen}
     77\newboolean{PrintVersion}
     78\setboolean{PrintVersion}{false}
     79% CHANGE THIS VALUE TO "true" as necessary, to improve printed results for hard copies by overriding some options of the hyperref package, called below.
     80
     81%\usepackage{nomencl} % For a nomenclature (optional; available from ctan.org)
     82\usepackage{amsmath,amssymb,amstext} % Lots of math symbols and environments
     83
     84\usepackage{tikz} % for diagrams and figures
     85\def\checkmark{\tikz\fill[scale=0.4](0,.35) -- (.25,0) -- (1,.7) -- (.25,.15) -- cycle;}
     86\usepackage{subcaption}
    887\usepackage{fullpage,times,comment}
    988\usepackage{textcomp}
    10 \usepackage{epic,eepic}
    11 \usepackage{dirtytalk}
    12 \usepackage{xspace}
    13 \usepackage{subcaption}
    1489\usepackage{graphicx}
    1590\usepackage{tabularx}
    16 \usepackage[acronym]{glossaries}
    17 \usepackage{listings}                                           % format program code
    18 \usepackage[flushmargin]{footmisc}                              % support label/reference in footnote
    19 \usepackage{mathptmx}                                           % better math font with "times"
    20 \usepackage[usenames]{color}
    21 \usepackage[pagewise]{lineno}
    22 \renewcommand{\linenumberfont}{\scriptsize\sffamily}
    23 \usepackage{fancyhdr}
    24 \usepackage{float}
    25 \input{style}                                                   % bespoke macros used in the document
    26 \usepackage[dvips,plainpages=false,pdfpagelabels,pdfpagemode=UseNone,colorlinks=true,pagebackref=true,linkcolor=blue,citecolor=blue,urlcolor=blue,pagebackref=true,breaklinks=true]{hyperref}
    27 \urlstyle{rm}
    28 % \usepackage{breakurl} % used to avoid line breaks inside urls -> uncomment later if needed
    29 
    30 \usepackage{tikz}
    31 \def\checkmark{\tikz\fill[scale=0.4](0,.35) -- (.25,0) -- (1,.7) -- (.25,.15) -- cycle;}
     91\input{style}
     92
     93% Hyperlinks make it very easy to navigate an electronic document.
     94% In addition, this is where you should specify the thesis title and author as they appear in the properties of the PDF document.
     95% Use the "hyperref" package
     96% N.B. HYPERREF MUST BE THE LAST PACKAGE LOADED; ADD ADDITIONAL PKGS ABOVE
     97\usepackage[dvips,pagebackref=false]{hyperref} % with basic options
     98\hypersetup{
     99    plainpages=false,       % needed if Roman numbers in frontpages
     100    unicode=false,          % non-Latin characters in Acrobat’s bookmarks
     101    pdftoolbar=true,        % show Acrobat’s toolbar?
     102    pdfmenubar=true,        % show Acrobat’s menu?
     103    pdffitwindow=false,     % window fit to page when opened
     104    pdfstartview={FitH},    % fits the width of the page to the window
     105    pdftitle={High Level Concurrency in \CFA},
     106    pdfauthor={Colby Parsons},
     107    pdfsubject={Cforall},
     108%    pdfkeywords={keyword1} {key2} {key3}, % list of keywords, and uncomment this line if desired
     109    pdfnewwindow=true,      % links in new window
     110    colorlinks=true,        % false: boxed links; true: colored links
     111    linkcolor=blue,         % color of internal links
     112    citecolor=green,        % color of links to bibliography
     113    filecolor=magenta,      % color of file links
     114    urlcolor=cyan           % color of external links
     115}
     116\ifthenelse{\boolean{PrintVersion}}{   % for improved print quality, change some hyperref options
     117\hypersetup{    % override some previously defined hyperref options
     118%    colorlinks,%
     119    citecolor=black,%
     120    filecolor=black,%
     121    linkcolor=black,%
     122    urlcolor=black}
     123}{} % end of ifthenelse (no else)
     124
     125% \usepackage[acronym]{glossaries}
     126\usepackage[automake,toc,abbreviations]{glossaries-extra} % Exception to the rule of hyperref being the last add-on package
     127% If glossaries-extra is not in your LaTeX distribution, get it from CTAN (http://ctan.org/pkg/glossaries-extra),
     128% although it's supposed to be in both the TeX Live and MikTeX distributions. There are also documentation and
     129% installation instructions there.
    32130
    33131% Setting up the page margins...
    34 \setlength{\textheight}{9in}
    35 \setlength{\topmargin}{-0.45in}
    36 \setlength{\headsep}{0.25in}
    37132% uWaterloo thesis requirements specify a minimum of 1 inch (72pt) margin at the
    38 % top, bottom, and outside page edges and a 1.125 in. (81pt) gutter margin (on binding side).
     133% top, bottom, and outside page edges and a 1.125 in. (81pt) gutter margin (on binding side). 
    39134% While this is not an issue for electronic viewing, a PDF may be printed, and so we have the same page layout for both printed and electronic versions, we leave the gutter margin in.
    40135% Set margins to minimum permitted by uWaterloo thesis regulations:
    … …  
    44139% edge is less than 15 mm (0.6 in.)
    45140\setlength{\marginparsep}{0pt} % width of space between body text and margin notes
    46 \setlength{\evensidemargin}{0.125in} % Adds 1/8 in. to binding side of all
     141\setlength{\evensidemargin}{0.125in} % Adds 1/8 in. to binding side of all 
    47142% even-numbered pages when the "twoside" printing option is selected
    48143\setlength{\oddsidemargin}{0.125in} % Adds 1/8 in. to the left of all pages when "oneside" printing is selected, and to the left of all odd-numbered pages when "twoside" printing is selected
    … …  
    53148\setlength{\parskip}{\medskipamount}
    54149
    55 \newsavebox{\myboxA}                                    % used with subfigure
    56 \newsavebox{\myboxB}
    57 
    58 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
    59 
    60 % Names used in the document.
    61 
    62 \newcommand{\Version}{1.0.0}
    63 \newcommand{\CS}{C\raisebox{-0.9ex}{\large$^\sharp$}\xspace}
    64 
    65 \newcommand{\Textbf}[2][red]{{\color{#1}{\textbf{#2}}}}
    66 \newcommand{\Emph}[2][red]{{\color{#1}\textbf{\emph{#2}}}}
    67 \newcommand{\R}[1]{\Textbf{#1}}
    68 \newcommand{\B}[1]{{\Textbf[blue]{#1}}}
    69 \newcommand{\G}[1]{{\Textbf[OliveGreen]{#1}}}
    70 \newcommand{\uC}{$\mu$\CC}
    71 \newcommand{\cit}{\textsuperscript{[Citation Needed]}\xspace}
    72 \newcommand{\TODO}{{\Textbf{TODO}}}
    73 
     150% The following statement controls the line spacing. 
     151% The default spacing corresponds to good typographic conventions and only slight changes (e.g., perhaps "1.2"), if any, should be made.
     152\renewcommand{\baselinestretch}{1} % this is the default line space setting
     153
     154% By default, each chapter will start on a recto (right-hand side) page.
     155% We also force each section of the front pages to start on a recto page by inserting \cleardoublepage commands.
     156% In many cases, this will require that the verso (left-hand) page be blank, and while it should be counted, a page number should not be printed.
     157% The following statements ensure a page number is not printed on an otherwise blank verso page.
     158\let\origdoublepage\cleardoublepage
     159\newcommand{\clearemptydoublepage}{%
     160  \clearpage{\pagestyle{empty}\origdoublepage}}
     161\let\cleardoublepage\clearemptydoublepage
     162
     163% Define Glossary terms (This is properly done here, in the preamble and could also be \input{} from a separate file...)
    74164\input{glossary}
    75 
    76 \newsavebox{\LstBox}
    77 
    78 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
    79 
    80 \setcounter{secnumdepth}{2}                           % number subsubsections
    81 \setcounter{tocdepth}{2}                              % subsubsections in table of contents
    82 % \linenumbers                                          % comment out to turn off line numbering
    83 \makeindex
    84 \pagestyle{fancy}
    85 \fancyhf{}
    86 \cfoot{\thepage}
    87 \rfoot{v\input{version}}
    88 
    89 
    90 
    91 %======================================================================
    92 %   L O G I C A L    D O C U M E N T -- the content of your thesis
     165\makeglossaries
     166
     167%======================================================================
     168%   L O G I C A L    D O C U M E N T
     169% The logical document contains the main content of your thesis.
     170% Being a large document, it is a good idea to divide your thesis into several files, each one containing one chapter or other significant chunk of content, so you can easily shuffle things around later if desired.
    93171%======================================================================
    94172\begin{document}
    95173\newtheorem{theorem}{Theorem}
    96174
    97 % For a large document, it is a good idea to divide your thesis
    98 % into several files, each one containing one chapter.
    99 % To illustrate this idea, the "front pages" (i.e., title page,
    100 % declaration, borrowers' page, abstract, acknowledgements,
    101 % dedication, table of contents, list of tables, list of figures,
    102 % nomenclature) are contained within the file "thesis-frontpgs.tex" which is
    103 % included into the document by the following statement.
    104175%----------------------------------------------------------------------
    105176% FRONT MATERIAL
    106 %----------------------------------------------------------------------
    107 \input{frontpgs}
     177% title page,declaration, borrowers' page, abstract, acknowledgements,
     178% dedication, table of contents, list of tables, list of figures, nomenclature, etc.
     179%----------------------------------------------------------------------
     180\input{frontpgs}
    108181
    109182%----------------------------------------------------------------------
    110183% MAIN BODY
    111 %----------------------------------------------------------------------
    112 
     184% We suggest using a separate file for each chapter of your thesis.
     185% Start each chapter file with the \chapter command.
     186% Only use \documentclass or \begin{document} and \end{document} commands in this master document.
     187% Tip: Putting each sentence on a new line is a way to simplify later editing.
     188%----------------------------------------------------------------------
    113189\input{intro}
    114190
    … …  
    123199\input{actors}
    124200
    125 \clearpage
    126 
    127 % B I B L I O G R A P H Y
     201%----------------------------------------------------------------------
     202% END MATERIAL
     203% Bibliography, Appendices, Index, etc.
     204%----------------------------------------------------------------------
     205
     206% Bibliography
     207
     208% The following statement selects the style to use for references. 
     209% It controls the sort order of the entries in the bibliography and also the formatting for the in-text labels.
     210\bibliographystyle{plain}
     211% This specifies the location of the file containing the bibliographic information. 
     212% It assumes you're using BibTeX to manage your references (if not, why not?).
     213\cleardoublepage % This is needed if the "book" document class is used, to place the anchor in the correct page, because the bibliography will start on its own page.
     214% Use \clearpage instead if the document class uses the "oneside" argument
     215\phantomsection  % With hyperref package, enables hyperlinking from the table of contents to bibliography             
     216% The following statement causes the title "References" to be used for the bibliography section:
     217\renewcommand*{\bibname}{References}
     218
     219% Add the References to the Table of Contents
     220\addcontentsline{toc}{chapter}{\textbf{References}}
     221
     222\bibliography{pl,local}
     223% Tip: You can create multiple .bib files to organize your references.
     224% Just list them all in the \bibliogaphy command, separated by commas (no spaces).
     225
     226% The following statement causes the specified references to be added to the bibliography even if they were not cited in the text.
     227% The asterisk is a wildcard that causes all entries in the bibliographic database to be included (optional).
     228% \nocite{*}
     229%----------------------------------------------------------------------
     230
     231% Appendices
     232
     233% The \appendix statement indicates the beginning of the appendices.
     234% \appendix
     235% % Add an un-numbered title page before the appendices and a line in the Table of Contents
     236% \chapter*{APPENDICES}
     237% \addcontentsline{toc}{chapter}{APPENDICES}
     238% % Appendices are just more chapters, with different labeling (letters instead of numbers).
     239% \input{appendix-matlab_plots.tex}
     240
     241% GLOSSARIES (Lists of definitions, abbreviations, symbols, etc. provided by the glossaries-extra package)
    128242% -----------------------------
    129 \addcontentsline{toc}{chapter}{Bibliography}
    130 \bibliographystyle{plain}
    131 \bibliography{pl,local}
    132 \cleardoublepage
    133 \phantomsection         % allows hyperref to link to the correct page
    134 
    135 % G L O S S A R Y
    136 % -----------------------------
    137 \addcontentsline{toc}{chapter}{Glossary}
    138243\printglossary
    139244\cleardoublepage
    140245\phantomsection         % allows hyperref to link to the correct page
    141246
    142 
    143 \end{document}
     247%----------------------------------------------------------------------
     248\end{document} % end of logical document
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