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-                      rc4e3419c
+                      r79debb02
+% uWaterloo Thesis Template for LaTeX
+% Last Updated June 14, 2017 by Stephen Carr, IST Client Services
+% FOR ASSISTANCE, please send mail to rt-IST-CSmathsci@ist.uwaterloo.ca
+% Effective October 2006, the University of Waterloo
+% requires electronic thesis submission. See the uWaterloo thesis regulations at
+%======================================================================
+% University of Waterloo Thesis Template for LaTeX
+% Last Updated November, 2020
+% by Stephen Carr, IST Client Services,
+% University of Waterloo, 200 University Ave. W., Waterloo, Ontario, Canada
+% FOR ASSISTANCE, please send mail to request@uwaterloo.ca
+% DISCLAIMER
+% To the best of our knowledge, this template satisfies the current uWaterloo thesis requirements.
+% However, it is your responsibility to assure that you have met all requirements of the University and your particular department.
+% Many thanks for the feedback from many graduates who assisted the development of this template.
+% Also note that there are explanatory comments and tips throughout this template.
+%======================================================================
+% Some important notes on using this template and making it your own...
+% The University of Waterloo has required electronic thesis submission since October 2006.
+% See the uWaterloo thesis regulations at
 % https://uwaterloo.ca/graduate-studies/thesis.
+% DON'T FORGET TO ADD YOUR OWN NAME AND TITLE in the "hyperref" package
+% configuration below. THIS INFORMATION GETS EMBEDDED IN THE PDF FINAL PDF DOCUMENT.
+% You can view the information if you view Properties of the PDF document.
+% Many faculties/departments also require one or more printed
+% copies. This template attempts to satisfy both types of output.
+% It is based on the standard "book" document class which provides all necessary
+% sectioning structures and allows multi-part theses.
+% DISCLAIMER
+% To the best of our knowledge, this template satisfies the current uWaterloo requirements.
+% However, it is your responsibility to assure that you have met all
+% requirements of the University and your particular department.
+% Many thanks for the feedback from many graduates that assisted the development of this template.
+% -----------------------------------------------------------------------
+% By default, output is produced that is geared toward generating a PDF
+% version optimized for viewing on an electronic display, including
+% hyperlinks within the PDF.
+% This thesis template is geared towards generating a PDF version optimized for viewing on an electronic display, including hyperlinks within the PDF.
+% DON'T FORGET TO ADD YOUR OWN NAME AND TITLE in the "hyperref" package configuration below.
+% THIS INFORMATION GETS EMBEDDED IN THE PDF FINAL PDF DOCUMENT.
+% You can view the information if you view properties of the PDF document.
+% Many faculties/departments also require one or more printed copies.
+% This template attempts to satisfy both types of output.
+% See additional notes below.
+% It is based on the standard "book" document class which provides all necessary sectioning structures and allows multi-part theses.
+% If you are using this template in Overleaf (cloud-based collaboration service), then it is automatically processed and previewed for you as you edit.
+% For people who prefer to install their own LaTeX distributions on their own computers, and process the source files manually, the following notes provide the sequence of tasks:
 % E.g. to process a thesis called "mythesis.tex" based on this template, run:
 % pdflatex mythesis     -- first pass of the pdflatex processor
 % bibtex mythesis       -- generates bibliography from .bib data file(s)
 % makeindex         -- should be run only if an index is used
+% makeindex         -- should be run only if an index is used
 % pdflatex mythesis     -- fixes numbering in cross-references, bibliographic references, glossaries, index, etc.
+% pdflatex mythesis     -- fixes numbering in cross-references, bibliographic references, glossaries, index, etc.
+% If you use the recommended LaTeX editor, Texmaker, you would open the mythesis.tex
+% file, then click the PDFLaTeX button. Then run BibTeX (under the Tools menu).
+% Then click the PDFLaTeX button two more times. If you have an index as well,
+% you'll need to run MakeIndex from the Tools menu as well, before running pdflatex
+% pdflatex mythesis     -- it takes a couple of passes to completely process all cross-references
+% If you use the recommended LaTeX editor, Texmaker, you would open the mythesis.tex file, then click the PDFLaTeX button. Then run BibTeX (under the Tools menu).
+% Then click the PDFLaTeX button two more times.
+% If you have an index as well,you'll need to run MakeIndex from the Tools menu as well, before running pdflatex
 % the last two times.
+% N.B. The "pdftex" program allows graphics in the following formats to be
+% included with the "\includegraphics" command: PNG, PDF, JPEG, TIFF
+% Tip 1: Generate your figures and photos in the size you want them to appear
+% in your thesis, rather than scaling them with \includegraphics options.
+% Tip 2: Any drawings you do should be in scalable vector graphic formats:
+% SVG, PNG, WMF, EPS and then converted to PNG or PDF, so they are scalable in
+% the final PDF as well.
+% Tip 3: Photographs should be cropped and compressed so as not to be too large.
+% To create a PDF output that is optimized for double-sided printing:
+%
+% 1) comment-out the \documentclass statement in the preamble below, and
+% un-comment the second \documentclass line.
+%
+% 2) change the value assigned below to the boolean variable
+% "PrintVersion" from "false" to "true".
+% --------------------- Start of Document Preamble -----------------------
+% Specify the document class, default style attributes, and page dimensions
+% N.B. The "pdftex" program allows graphics in the following formats to be included with the "\includegraphics" command: PNG, PDF, JPEG, TIFF
+% Tip: Generate your figures and photos in the size you want them to appear in your thesis, rather than scaling them with \includegraphics options.
+% Tip: Any drawings you do should be in scalable vector graphic formats: SVG, PNG, WMF, EPS and then converted to PNG or PDF, so they are scalable in the final PDF as well.
+% Tip: Photographs should be cropped and compressed so as not to be too large.
+% To create a PDF output that is optimized for double-sided printing:
+% 1) comment-out the \documentclass statement in the preamble below, and un-comment the second \documentclass line.
+% 2) change the value assigned below to the boolean variable "PrintVersion" from " false" to "true".
+%======================================================================
+%   D O C U M E N T   P R E A M B L E
+% Specify the document class, default style attributes, and page dimensions, etc.
 % For hyperlinked PDF, suitable for viewing on a computer, use this:
 \documentclass[letterpaper,12pt,titlepage,oneside,final]{book}
+% For PDF, suitable for double-sided printing, change the PrintVersion variable below
+% to "true" and use this \documentclass line instead of the one above:
+% For PDF, suitable for double-sided printing, change the PrintVersion variable below to "true" and use this \documentclass line instead of the one above:
 %\documentclass[letterpaper,12pt,titlepage,openright,twoside,final]{book}
+\newcommand{\href}[1]{#1} % does nothing, but defines the command so the
+    % print-optimized version will ignore \href tags (redefined by hyperref pkg).
+% Some LaTeX commands I define for my own nomenclature.
+% If you have to, it's easier to make changes to nomenclature once here than in a million places throughout your thesis!
+\newcommand{\package}[1]{\textbf{#1}} % package names in bold text
+\newcommand{\cmmd}[1]{\textbackslash\texttt{#1}} % command name in tt font
+\newcommand{\href}[1]{#1} % does nothing, but defines the command so the print-optimized version will ignore \href tags (redefined by hyperref pkg).
+%\newcommand{\texorpdfstring}[2]{#1} % does nothing, but defines the command
+% Anything defined here may be redefined by packages added below...
 % This package allows if-then-else control structures.
 …
 \newboolean{PrintVersion}
 \setboolean{PrintVersion}{false}
+% CHANGE THIS VALUE TO "true" as necessary, to improve printed results for hard copies
+% by overriding some options of the hyperref package below.
+% CHANGE THIS VALUE TO "true" as necessary, to improve printed results for hard copies by overriding some options of the hyperref package, called below.
 %\usepackage{nomencl} % For a nomenclature (optional; available from ctan.org)
 …
 % Hyperlinks make it very easy to navigate an electronic document.
+% In addition, this is where you should specify the thesis title
+% and author as they appear in the properties of the PDF document.
+% In addition, this is where you should specify the thesis title and author as they appear in the properties of the PDF document.
 % Use the "hyperref" package
 % N.B. HYPERREF MUST BE THE LAST PACKAGE LOADED; ADD ADDITIONAL PKGS ABOVE
 \usepackage[pagebackref=false]{hyperref} % with basic options
+                % N.B. pagebackref=true provides links back from the References to the body text. This can cause trouble for printing.
+%\usepackage[pdftex,pagebackref=true]{hyperref}
+% N.B. pagebackref=true provides links back from the References to the body text. This can cause trouble for printing.
 \hypersetup{
         plainpages=false,       % needed if Roman numbers in frontpages
         unicode=false,          % non-Latin characters in Acrobat’s bookmarks
         pdftoolbar=true,        % show Acrobat’s toolbar?
         pdfmenubar=true,        % show Acrobat’s menu?
+        unicode=false,          % non-Latin characters in Acrobat's bookmarks
+        pdftoolbar=true,        % show Acrobat's toolbar?
+        pdfmenubar=true,        % show Acrobat's menu?
         pdffitwindow=false,     % window fit to page when opened
         pdfstartview={FitH},    % fits the width of the page to the window
 …
 \ifthenelse{\boolean{PrintVersion}}{   % for improved print quality, change some hyperref options
 \hypersetup{    % override some previously defined hyperref options
         citecolor=black,
         filecolor=black,
         linkcolor=black,
+        citecolor=black,%
+        filecolor=black,%
+        linkcolor=black,%
         urlcolor=black
 }}{} % end of ifthenelse (no else)
 …
 % Setting up the page margins...
+\setlength{\textheight}{9in}\setlength{\topmargin}{-0.45in}\setlength{\headsep}{0.25in}
+\setlength{\textheight}{9in}
+\setlength{\topmargin}{-0.45in}
+\setlength{\headsep}{0.25in}
 % uWaterloo thesis requirements specify a minimum of 1 inch (72pt) margin at the
+% top, bottom, and outside page edges and a 1.125 in. (81pt) gutter
+% margin (on binding side). While this is not an issue for electronic
+% viewing, a PDF may be printed, and so we have the same page layout for
+% both printed and electronic versions, we leave the gutter margin in.
+% top, bottom, and outside page edges and a 1.125 in. (81pt) gutter margin (on binding side).
+% While this is not an issue for electronic viewing, a PDF may be printed, and so we have the same page layout for both printed and electronic versions, we leave the gutter margin in.
 % Set margins to minimum permitted by uWaterloo thesis regulations:
 \setlength{\marginparwidth}{0pt} % width of margin notes
 …
 \setlength{\evensidemargin}{0.125in} % Adds 1/8 in. to binding side of all
 % even-numbered pages when the "twoside" printing option is selected
+\setlength{\oddsidemargin}{0.125in} % Adds 1/8 in. to the left of all pages
+% when "oneside" printing is selected, and to the left of all odd-numbered
+% pages when "twoside" printing is selected
+\setlength{\textwidth}{6.375in} % assuming US letter paper (8.5 in. x 11 in.) and
+% side margins as above
+\setlength{\oddsidemargin}{0.125in} % Adds 1/8 in. to the left of all pages when "oneside" printing is selected, and to the left of all odd-numbered pages when "twoside" printing is selected
+\setlength{\textwidth}{6.375in} % assuming US letter paper (8.5 in. x 11 in.) and side margins as above
 \raggedbottom
+% The following statement specifies the amount of space between
+% paragraphs. Other reasonable specifications are \bigskipamount and \smallskipamount.
+% The following statement specifies the amount of space between paragraphs. Other reasonable specifications are \bigskipamount and \smallskipamount.
 \setlength{\parskip}{\medskipamount}
+% The following statement controls the line spacing.  The default
+% spacing corresponds to good typographic conventions and only slight
+% changes (e.g., perhaps "1.2"), if any, should be made.
+% The following statement controls the line spacing.
+% The default spacing corresponds to good typographic conventions and only slight changes (e.g., perhaps "1.2"), if any, should be made.
 \renewcommand{\baselinestretch}{1} % this is the default line space setting
+% By default, each chapter will start on a recto (right-hand side)
+% page.  We also force each section of the front pages to start on
+% a recto page by inserting \cleardoublepage commands.
+% In many cases, this will require that the verso page be
+% blank and, while it should be counted, a page number should not be
+% printed.  The following statements ensure a page number is not
+% printed on an otherwise blank verso page.
+% By default, each chapter will start on a recto (right-hand side) page.
+% We also force each section of the front pages to start on a recto page by inserting \cleardoublepage commands.
+% In many cases, this will require that the verso (left-hand) page be blank, and while it should be counted, a page number should not be printed.
+% The following statements ensure a page number is not printed on an otherwise blank verso page.
 \let\origdoublepage\cleardoublepage
 \newcommand{\clearemptydoublepage}{%
 …
 \input{common}
 \CFAStyle                                               % CFA code-style for all languages
 \lstset{basicstyle=\linespread{0.9}\tt}
+\lstset{language=CFA,basicstyle=\linespread{0.9}\tt}    % CFA default language
 % glossary of terms to use
 …
 \makeindex
+\newcommand\io{\glsxtrshort{io}}%
+%======================================================================
+%   L O G I C A L    D O C U M E N T -- the content of your thesis
+\newcommand\io{\glsxtrshort{io}\xspace}%
+%======================================================================
+%   L O G I C A L    D O C U M E N T
+% The logical document contains the main content of your thesis.
+% Being a large document, it is a good idea to divide your thesis into several files, each one containing one chapter or other significant chunk of content, so you can easily shuffle things around later if desired.
 %======================================================================
 \begin{document}
-% For a large document, it is a good idea to divide your thesis
-% into several files, each one containing one chapter.
-% To illustrate this idea, the "front pages" (i.e., title page,
-% declaration, borrowers' page, abstract, acknowledgements,
-% dedication, table of contents, list of tables, list of figures,
-% nomenclature) are contained within the file "uw-ethesis-frontpgs.tex" which is
-% included into the document by the following statement.
 %----------------------------------------------------------------------
 % FRONT MATERIAL
+% title page,declaration, borrowers' page, abstract, acknowledgements,
+% dedication, table of contents, list of tables, list of figures, nomenclature, etc.
 %----------------------------------------------------------------------
 \input{text/front.tex}
 %----------------------------------------------------------------------
 % MAIN BODY
 %----------------------------------------------------------------------
 % Because this is a short document, and to reduce the number of files
 % needed for this template, the chapters are not separate
 % documents as suggested above, but you get the idea. If they were
 % separate documents, they would each start with the \chapter command, i.e,
+% do not contain \documentclass or \begin{document} and \end{document} commands.
+% We suggest using a separate file for each chapter of your thesis.
+% Start each chapter file with the \chapter command.
+% Only use \documentclass or \begin{document} and \end{document} commands in this master document.
+% Tip: Putting each sentence on a new line is a way to simplify later editing.
+%----------------------------------------------------------------------
 \part{Introduction}
 \input{text/intro.tex}
 …
 %----------------------------------------------------------------------
 % END MATERIAL
+%----------------------------------------------------------------------
+% B I B L I O G R A P H Y
+% -----------------------
+% The following statement selects the style to use for references.  It controls the sort order of the entries in the bibliography and also the formatting for the in-text labels.
+% Bibliography, Appendices, Index, etc.
+%----------------------------------------------------------------------
+% Bibliography
+% The following statement selects the style to use for references.
+% It controls the sort order of the entries in the bibliography and also the formatting for the in-text labels.
 \bibliographystyle{plain}
 % This specifies the location of the file containing the bibliographic information.
+% It assumes you're using BibTeX (if not, why not?).
+\cleardoublepage % This is needed if the book class is used, to place the anchor in the correct page,
+                 % because the bibliography will start on its own page.
+                 % Use \clearpage instead if the document class uses the "oneside" argument
+% It assumes you're using BibTeX to manage your references (if not, why not?).
+\cleardoublepage % This is needed if the "book" document class is used, to place the anchor in the correct page, because the bibliography will start on its own page.
+% Use \clearpage instead if the document class uses the "oneside" argument
 \phantomsection  % With hyperref package, enables hyperlinking from the table of contents to bibliography
 % The following statement causes the title "References" to be used for the bibliography section:
 …
 \bibliography{local,pl}
 % Tip 5: You can create multiple .bib files to organize your references.
+% Tip: You can create multiple .bib files to organize your references.
 % Just list them all in the \bibliogaphy command, separated by commas (no spaces).
 % % The following statement causes the specified references to be added to the bibliography% even if they were not
 % % cited in the text. The asterisk is a wildcard that causes all entries in the bibliographic database to be included (optional).
+% The following statement causes the specified references to be added to the bibliography even if they were not cited in the text.
+% The asterisk is a wildcard that causes all entries in the bibliographic database to be included (optional).
 % \nocite{*}
+%----------------------------------------------------------------------
+% Appendices
 % The \appendix statement indicates the beginning of the appendices.
 \appendix
 % Add a title page before the appendices and a line in the Table of Contents
+% Add an un-numbered title page before the appendices and a line in the Table of Contents
 \chapter*{APPENDICES}
 \addcontentsline{toc}{chapter}{APPENDICES}
+% Appendices are just more chapters, with different labeling (letters instead of numbers).
 %======================================================================
 \chapter[PDF Plots From Matlab]{Matlab Code for Making a PDF Plot}
 …
 %\input{thesis.ind}                             % index
+\phantomsection
+\end{document}
+\phantomsection         % allows hyperref to link to the correct page
+%----------------------------------------------------------------------
+\end{document} % end of logical document

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