Index: doc/theses/colby_parsons_MMath/Makefile
===================================================================
--- doc/theses/colby_parsons_MMath/Makefile	(revision f945fa7ba076d346ab1aa115747f79712d70331d)
+++ doc/theses/colby_parsons_MMath/Makefile	(revision f945fa7ba076d346ab1aa115747f79712d70331d)
@@ -0,0 +1,177 @@
+## Define the configuration variables.
+
+Build = build
+Figures = figures
+Macros = ../../LaTeXmacros
+TeXLIB = .:style:text:${Macros}:${Build}:../../bibliography:
+LaTeX  = TEXINPUTS=${TeXLIB} && export TEXINPUTS && latex -halt-on-error -output-directory=${Build}
+BibTeX = BIBINPUTS=${TeXLIB} && export BIBINPUTS && bibtex
+
+MAKEFLAGS = --no-print-directory --silent #
+VPATH = ${Build} ${Figures}
+
+## Define the text source files.
+
+SOURCES = ${addsuffix .tex, \
+	text/intro \
+	text/CFA_intro \
+	text/actors \
+	text/frontpgs \
+	text/CFA_concurrency \
+	thesis \
+	text/mutex_stmt \
+	text/channels \
+	text/waituntil \
+	text/conclusion \
+}
+
+FIGURES = ${addsuffix .pgf, \
+	figures/pykeExecutor \
+	figures/pykeCFAExecutor \
+	figures/nasusExecutor \
+	figures/nasusCFAExecutor \
+	figures/pykeMatrix \
+	figures/pykeCFAMatrix \
+	figures/nasusMatrix \
+	figures/nasusCFAMatrix \
+	figures/pykeRepeat \
+	figures/pykeCFARepeat \
+	figures/nasusRepeat \
+	figures/nasusCFARepeat \
+	figures/pykeCFABalance-One \
+	figures/nasusCFABalance-One\
+	figures/pykeCFABalance-Multi \
+	figures/nasusCFABalance-Multi \
+	figures/pyke_Aggregate_Lock_2 \
+	figures/pyke_Aggregate_Lock_4 \
+	figures/pyke_Aggregate_Lock_8 \
+	figures/nasus_Aggregate_Lock_2 \
+	figures/nasus_Aggregate_Lock_4 \
+	figures/nasus_Aggregate_Lock_8 \
+	figures/nasus_Channel_Contention \
+	figures/pyke_Channel_Contention \
+	figures/pyke_Future \
+	figures/nasus_Future \
+	figures/pyke_Contend_2 \
+	figures/pyke_Contend_4 \
+	figures/pyke_Contend_8 \
+	figures/pyke_Spin_2 \
+	figures/pyke_Spin_4 \
+	figures/pyke_Spin_8 \
+	figures/nasus_Contend_2 \
+	figures/nasus_Contend_4 \
+	figures/nasus_Contend_8 \
+	figures/nasus_Spin_2 \
+	figures/nasus_Spin_4 \
+	figures/nasus_Spin_8 \
+}
+
+DATA = 	data/pykeSendStatic \
+	data/pykeSendDynamic \
+	data/pykeExecutorMem \
+	data/nasusSendStatic \
+	data/nasusSendDynamic \
+	data/pykeExecutorMem \
+	data/nasus_Order \
+	data/pyke_Order \
+
+PICTURES = ${addsuffix .tikz, \
+	diagrams/standard_actor \
+	diagrams/inverted_actor \
+	diagrams/gulp \
+	diagrams/chain_swap \
+	diagrams/M_to_one_swap \
+	diagrams/acyclic_swap \
+	diagrams/cyclic_swap \
+	diagrams/steal \
+	diagrams/uCpp_select_tree \
+}
+
+PROGRAMS = ${addsuffix .tex, \
+}
+
+GRAPHS = ${addsuffix .tex, \
+}
+
+## Define the documents that need to be made.
+
+DOCUMENT = thesis.pdf
+BASE = ${basename ${DOCUMENT}}
+
+# Directives #
+
+.PHONY : all clean					# not file names
+
+all : ${DOCUMENT}
+
+clean :
+	@rm -frv ${DOCUMENT} ${BASE}.ps ${Build}
+
+# File Dependencies #
+
+${DOCUMENT} : ${BASE}.ps
+	ps2pdf $<
+
+${BASE}.ps : ${BASE}.dvi
+	dvips ${Build}/$< -o $@
+
+${BASE}.dvi : Makefile ${GRAPHS} ${PROGRAMS} ${PICTURES} ${FIGURES} ${SOURCES} ${DATA} \
+		glossary.tex style/style.tex ${Macros}/common.tex ${Macros}/lstlang.sty ${Macros}/indexstyle local.bib ../../bibliography/pl.bib | ${Build}
+	# Must have *.aux file containing citations for bibtex
+	if [ ! -r ${basename $@}.aux ] ; then ${LaTeX} ${basename $@}.tex ; fi
+	${BibTeX} ${Build}/${basename $@}
+	# Some citations reference others so run again to resolve these citations
+#	${LaTeX} ${basename $@}.tex
+#	-${BibTeX} ${Build}/${basename $@}
+	# Make index from *.aux entries and input index at end of document
+	makeglossaries -q -s ${Build}/${basename $@}.ist ${Build}/${basename $@}
+	# Run again to finish citations
+	${LaTeX} ${basename $@}.tex
+
+## Define the default recipes.
+
+${Build} :
+	mkdir -p ${Build}
+
+# The following rules are currently unused but could be used later 
+# if we want to swap figures to be .pngs
+# %.tex : %.fig ${Build}
+# 	fig2dev -L eepic $< > ${Build}/$@
+
+# %.ps : %.fig | ${Build}
+# 	fig2dev -L ps $< > ${Build}/$@
+
+# %.pstex : %.fig | ${Build}
+# 	fig2dev -L pstex $< > ${Build}/$@
+# 	fig2dev -L pstex_t -p ${Build}/$@ $< > ${Build}/$@_t
+
+# #-----------------------------------------------------------------------------------
+# # Tools to generate png files
+# # to create a png we create a pdf and convert it to png
+# %.png : build/%.pstex figures/%.tex ${Build}
+# 	echo ${basename $@}
+# 	${LaTeX} figures/${basename $@}.tex
+# 	dvips build/${basename $@}.dvi -o build/${basename $@}.ps
+# 	ps2pdf build/${basename $@}.ps
+# 	convert -negate ${basename $@}.pdf $@
+
+# creating a pdf of a figure requires generating some latex that just includes the figure
+# figures/%.tex: build/%.pstex ${Build}
+# 	echo -n 	"\documentclass[preview]{standalone}\n" 	\
+# 			"\usepackage[T1]{fontenc}\n" 			\
+# 			"\usepackage[usenames]{color}\n" 		\
+# 			"\usepackage{graphicx}\n" 			\
+# 			"\usepackage{listings}\n" 			\
+# 			"\usepackage{xspace}\n" 			\
+# 			"\input{style}\n" 				\
+# 			"\\\\begin{document}\n"				\
+# 			"{\\\\resizebox{3\\\\textwidth}{!}{\input{${basename ${notdir $@}}.pstex_t}}}\n" \
+# 			"\end{document}" > $@
+
+data/%: ;
+%.tikz: ;
+%.pgf: ;
+
+# Local Variables: #
+# compile-command: "make" #
+# End: #