Index: c/theses/mike_brooks_MMath/plots/list-histo-rel-viii-java.gp
===================================================================
--- doc/theses/mike_brooks_MMath/plots/list-histo-rel-viii-java.gp	(revision 85011077f463222705e06ddd967cfd9b70f67596)
+++ 	(revision )
@@ -1,93 +1,0 @@
-set terminal pdfcairo color enhanced size 3.625in,2.0in font "Times,17"
-
-set size 1.0, 1.0    # scale of plot area inside terminal
-set origin 0.0, 0.0  # bottom-left corner
-
-INDIR="build"
-OUTDIR="build"
-
-set macros
-set output OUTDIR."/plot-list-histo-rel-viii-java.pdf"
-
-set grid
-set nokey
-
-set logscale y (2**0.2)
-set yrange [0.47:2.1];
-set format y ""
-set ytics (0.5, 0.6, 0.7, 0.8, 0.9, 1.0, 1.2, 1.4, 1.6, 1.8, 2.0) scale 0
-
-set logscale y2 (2**0.2)
-set y2range [0.47:2.1];
-set format y2 ""
-set y2tics (0.5, 0.6, 0.7, 0.8, 0.9, 1.0, 1.2, 1.4, 1.6, 1.8, 2.0) nomirror
-
-
-# Draw fake x axis at y=1.0; use vertical-only bounding 'H'
-unset border
-set arrow from graph 0, first 1 to graph 1, first 1 nohead lt -1 lw 2
-set arrow 101 from graph 1, graph 0 to graph 1, graph 1 nohead lw 1 front
-
-set xrange [-0.75:14.5];
-set xlabel "Size Zone; Prevalence"
-set xtics ( \
-   ""     0, \
-   ""    1, \
-   ""   2, \
-\
-   ""    5, \
-   ""   6, \
-   ""  7, \
-\
-   ""   10, \
-   ""  11, \
-   ""   12, \
-   ""  13, \
-) scale 0
-
-#set bmargin 0
-set tmargin 0
-set lmargin 0
-set rmargin 0.1
-
-barHtScale_fx = 0.30
-
-set errorbars 0 linewidth 4
-set pointintervalbox 0
-
-
-
-plot INDIR."/plot-list-histo-rel-viii-java.det.dat" \
-       i 3 + 0 using (0):(0):( 0 + 0):( 0 + 0 +       barHtScale_fx * $3):1:2 title columnheader(1) with boxxyerror fc rgb "blue"        fs transparent solid 0.15 noborder, \
-    '' i 3 + 2 using (0):(0):( 0 + 1):( 0 + 1 +       barHtScale_fx * $3):1:2 title columnheader(1) with boxxyerror fc rgb "dark-orange" fs transparent solid 0.15 noborder, \
-    '' i 3 + 1 using (0):(0):( 0 + 2):( 0 + 2 +       barHtScale_fx * $3):1:2 title columnheader(1) with boxxyerror fc rgb "magenta"     fs transparent solid 0.15 noborder, \
-    '' i 3 + 0 using (0 +  0 +       barHtScale_fx * $3):2 notitle with steps lc rgb "blue"         lw 0.3, \
-    '' i 3 + 2 using (0 +  1 +       barHtScale_fx * $3):2 notitle with steps lc rgb "dark-orange"  lw 0.3, \
-    '' i 3 + 1 using (0 +  2 +       barHtScale_fx * $3):2 notitle with steps lc rgb "magenta"      lw 0.3, \
-\
-    '' i 0 + 0 using (0):(0):( 5 + 0):( 5 + 0 +       barHtScale_fx * $3):1:2 title columnheader(1) with boxxyerror fc rgb "blue"        fs transparent solid 0.15 noborder, \
-    '' i 0 + 2 using (0):(0):( 5 + 1):( 5 + 1 +       barHtScale_fx * $3):1:2 title columnheader(1) with boxxyerror fc rgb "dark-orange" fs transparent solid 0.15 noborder, \
-    '' i 0 + 1 using (0):(0):( 5 + 2):( 5 + 2 +       barHtScale_fx * $3):1:2 title columnheader(1) with boxxyerror fc rgb "magenta"     fs transparent solid 0.15 noborder, \
-    '' i 0 + 0 using ( 5 + 0 +       barHtScale_fx * $3):2 notitle with steps lc rgb "blue"         lw 0.3, \
-    '' i 0 + 2 using ( 5 + 1 +       barHtScale_fx * $3):2 notitle with steps lc rgb "dark-orange"  lw 0.3, \
-    '' i 0 + 1 using ( 5 + 2 +       barHtScale_fx * $3):2 notitle with steps lc rgb "magenta"      lw 0.3, \
-\
-    '' i 6 + 0 using (0):(0):(10 + 0):(10 + 0 +       barHtScale_fx * $3):1:2 title columnheader(1) with boxxyerror fc rgb "blue"        fs transparent solid 0.15 noborder, \
-    '' i 6 + 2 using (0):(0):(10 + 1):(10 + 1 +       barHtScale_fx * $3):1:2 title columnheader(1) with boxxyerror fc rgb "dark-orange" fs transparent solid 0.15 noborder, \
-    '' i 6 + 1 using (0):(0):(10 + 2):(10 + 2 +       barHtScale_fx * $3):1:2 title columnheader(1) with boxxyerror fc rgb "magenta"     fs transparent solid 0.15 noborder, \
-    '' i 6 + 0 using (10 + 0 +       barHtScale_fx * $3):2 notitle with steps lc rgb "blue"         lw 0.3, \
-    '' i 6 + 2 using (10 + 1 +       barHtScale_fx * $3):2 notitle with steps lc rgb "dark-orange"  lw 0.3, \
-    '' i 6 + 1 using (10 + 2 +       barHtScale_fx * $3):2 notitle with steps lc rgb "magenta"      lw 0.3, \
-\
-   INDIR."/plot-list-histo-rel-viii-java.sum.dat" \
-       i 3 + 0 using ( 0 + 0):1:( 0 + 0):( 0 + 0 + .8) notitle with xerrorbars lc rgb "blue"        pt  7  ps 1.0, \
-    '' i 3 + 2 using ( 0 + 1):1:( 0 + 1):( 0 + 1 + .8) notitle with xerrorbars lc rgb "dark-orange" pt  9  ps 1.2, \
-    '' i 3 + 1 using ( 0 + 2):1:( 0 + 2):( 0 + 2 + .8) notitle with xerrorbars lc rgb "magenta"     pt  11 ps 1.2, \
-\
-    '' i 0 + 0 using ( 5 + 0):1:( 5 + 0):( 5 + 0 + .8) notitle with xerrorbars lc rgb "blue"        pt  7  ps 1.0, \
-    '' i 0 + 2 using ( 5 + 1):1:( 5 + 1):( 5 + 1 + .8) notitle with xerrorbars lc rgb "dark-orange" pt  9  ps 1.2, \
-    '' i 0 + 1 using ( 5 + 2):1:( 5 + 2):( 5 + 2 + .8) notitle with xerrorbars lc rgb "magenta"     pt  11 ps 1.2, \
-\
-    '' i 6 + 0 using (10 + 0):1:(10 + 0):(10 + 0 + .8) notitle with xerrorbars lc rgb "blue"        pt  7  ps 1.0, \
-    '' i 6 + 2 using (10 + 1):1:(10 + 1):(10 + 1 + .8) notitle with xerrorbars lc rgb "dark-orange" pt  9  ps 1.2, \
-    '' i 6 + 1 using (10 + 2):1:(10 + 2):(10 + 2 + .8) notitle with xerrorbars lc rgb "magenta"     pt  11 ps 1.2