Index: doc/theses/colby_parsons_MMAth/thesis.tex
===================================================================
--- doc/theses/colby_parsons_MMAth/thesis.tex	(revision 3d937e2a0ef674489d5136c4b6ed0aa7d78fea05)
+++ doc/theses/colby_parsons_MMAth/thesis.tex	(revision 3d937e2a0ef674489d5136c4b6ed0aa7d78fea05)
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+% requires tex packages: texlive-base texlive-latex-base tex-common texlive-humanities texlive-latex-extra texlive-fonts-recommended
+
+% inline code �...� (copyright symbol) emacs: C-q M-)
+% red highlighting �...� (registered trademark symbol) emacs: C-q M-.
+% blue highlighting �...� (sharp s symbol) emacs: C-q M-_
+% green highlighting �...� (cent symbol) emacs: C-q M-"
+% LaTex escape �...� (section symbol) emacs: C-q M-'
+% keyword escape �...� (pilcrow symbol) emacs: C-q M-^
+% math escape $...$ (dollar symbol)
+
+\documentclass[letterpaper,12pt,titlepage,oneside,final]{book}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+% Latex packages used in the document.
+\usepackage[T1]{fontenc}					% allow Latin1 (extended ASCII) characters
+\usepackage{textcomp}
+\usepackage[latin1]{inputenc}
+\usepackage{fullpage,times,comment}
+\usepackage{epic,eepic}
+\usepackage{upquote}						% switch curled `'" to straight
+\usepackage{dirtytalk}
+\usepackage{calc}
+\usepackage{xspace}
+\usepackage[labelformat=simple]{subfig}
+\renewcommand{\thesubfigure}{(\alph{subfigure})}
+\usepackage{graphicx}
+\usepackage{tabularx}
+\usepackage{multicol}
+\usepackage[acronym]{glossaries}
+\usepackage{varioref}
+\usepackage{listings}						% format program code
+\usepackage[flushmargin]{footmisc}				% support label/reference in footnote
+\usepackage{latexsym}						% \Box glyph
+\usepackage{mathptmx}						% better math font with "times"
+\usepackage[usenames]{color}
+\usepackage[pagewise]{lineno}
+\renewcommand{\linenumberfont}{\scriptsize\sffamily}
+\usepackage{fancyhdr}
+\usepackage{float}
+\usepackage{siunitx}
+\sisetup{ binary-units=true }
+\input{style}							% bespoke macros used in the document
+\usepackage{url}
+\usepackage[dvips,plainpages=false,pdfpagelabels,pdfpagemode=UseNone,colorlinks=true,pagebackref=true,linkcolor=blue,citecolor=blue,urlcolor=blue,pagebackref=true,breaklinks=true]{hyperref}
+\usepackage{breakurl}
+\urlstyle{rm}
+
+\usepackage{tikz}
+\def\checkmark{\tikz\fill[scale=0.4](0,.35) -- (.25,0) -- (1,.7) -- (.25,.15) -- cycle;}
+
+\setlength{\topmargin}{-0.45in}				% move running title into header
+\setlength{\headsep}{0.25in}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+% Names used in the document.
+
+\newcommand{\Version}{1.0.0}
+\newcommand{\CS}{C\raisebox{-0.9ex}{\large$^\sharp$}\xspace}
+
+\newcommand{\Textbf}[2][red]{{\color{#1}{\textbf{#2}}}}
+\newcommand{\Emph}[2][red]{{\color{#1}\textbf{\emph{#2}}}}
+\newcommand{\R}[1]{\Textbf{#1}}
+\newcommand{\B}[1]{{\Textbf[blue]{#1}}}
+\newcommand{\G}[1]{{\Textbf[OliveGreen]{#1}}}
+\newcommand{\uC}{$\mu$\CC}
+\newcommand{\cit}{\textsuperscript{[Citation Needed]}\xspace}
+\newcommand{\TODO}{{\Textbf{TODO}}}
+
+\input{glossary}
+
+\newsavebox{\LstBox}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+\setcounter{secnumdepth}{2}                           % number subsubsections
+\setcounter{tocdepth}{2}                              % subsubsections in table of contents
+% \linenumbers                                       	% comment out to turn off line numbering
+\makeindex
+\pagestyle{fancy}
+\fancyhf{}
+\cfoot{\thepage}
+\rfoot{v\input{version}}
+
+
+
+%======================================================================
+%   L O G I C A L    D O C U M E N T -- the content of your thesis
+%======================================================================
+\begin{document}
+
+% For a large document, it is a good idea to divide your thesis
+% into several files, each one containing one chapter.
+% To illustrate this idea, the "front pages" (i.e., title page,
+% declaration, borrowers' page, abstract, acknowledgements,
+% dedication, table of contents, list of tables, list of figures,
+% nomenclature) are contained within the file "thesis-frontpgs.tex" which is
+% included into the document by the following statement.
+%----------------------------------------------------------------------
+% FRONT MATERIAL
+%----------------------------------------------------------------------
+% \input{frontpgs}
+
+%----------------------------------------------------------------------
+% MAIN BODY
+%----------------------------------------------------------------------
+
+% \input{intro}
+
+% \input{cforall}
+
+% \input{basics}
+
+% \input{concurrency}
+
+% \input{parallelism}
+
+% \input{internals}
+
+% \input{together}
+
+% \input{results}
+
+% \input{future}
+
+
+\clearpage
+
+% B I B L I O G R A P H Y
+% -----------------------------
+\addcontentsline{toc}{chapter}{Bibliography}
+\bibliographystyle{plain}
+\bibliography{pl,local}
+\cleardoublepage
+\phantomsection		% allows hyperref to link to the correct page
+
+% G L O S S A R Y
+% -----------------------------
+\addcontentsline{toc}{chapter}{Glossary}
+\printglossary
+\cleardoublepage
+\phantomsection		% allows hyperref to link to the correct page
+
+
+\end{document}