source: doc/theses/thierry_delisle_PhD/thesis/thesis.tex @ aaa1c4cc

ADTarm-ehast-experimentalenumforall-pointer-decayjacob/cs343-translationnew-ast-unique-exprpthread-emulationqualifiedEnum
Last change on this file since aaa1c4cc was 7cef785, checked in by Thierry Delisle <tdelisle@…>, 4 years ago

Removed color from glossary links

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1% uWaterloo Thesis Template for LaTeX
2% Last Updated June 14, 2017 by Stephen Carr, IST Client Services
3% FOR ASSISTANCE, please send mail to rt-IST-CSmathsci@ist.uwaterloo.ca
4
5% Effective October 2006, the University of Waterloo
6% requires electronic thesis submission. See the uWaterloo thesis regulations at
7% https://uwaterloo.ca/graduate-studies/thesis.
8
9% DON'T FORGET TO ADD YOUR OWN NAME AND TITLE in the "hyperref" package
10% configuration below. THIS INFORMATION GETS EMBEDDED IN THE PDF FINAL PDF DOCUMENT.
11% You can view the information if you view Properties of the PDF document.
12
13% Many faculties/departments also require one or more printed
14% copies. This template attempts to satisfy both types of output.
15% It is based on the standard "book" document class which provides all necessary
16% sectioning structures and allows multi-part theses.
17
18% DISCLAIMER
19% To the best of our knowledge, this template satisfies the current uWaterloo requirements.
20% However, it is your responsibility to assure that you have met all
21% requirements of the University and your particular department.
22% Many thanks for the feedback from many graduates that assisted the development of this template.
23
24% -----------------------------------------------------------------------
25
26% By default, output is produced that is geared toward generating a PDF
27% version optimized for viewing on an electronic display, including
28% hyperlinks within the PDF.
29
30% E.g. to process a thesis called "mythesis.tex" based on this template, run:
31
32% pdflatex mythesis     -- first pass of the pdflatex processor
33% bibtex mythesis       -- generates bibliography from .bib data file(s)
34% makeindex         -- should be run only if an index is used
35% pdflatex mythesis     -- fixes numbering in cross-references, bibliographic references, glossaries, index, etc.
36% pdflatex mythesis     -- fixes numbering in cross-references, bibliographic references, glossaries, index, etc.
37
38% If you use the recommended LaTeX editor, Texmaker, you would open the mythesis.tex
39% file, then click the PDFLaTeX button. Then run BibTeX (under the Tools menu).
40% Then click the PDFLaTeX button two more times. If you have an index as well,
41% you'll need to run MakeIndex from the Tools menu as well, before running pdflatex
42% the last two times.
43
44% N.B. The "pdftex" program allows graphics in the following formats to be
45% included with the "\includegraphics" command: PNG, PDF, JPEG, TIFF
46% Tip 1: Generate your figures and photos in the size you want them to appear
47% in your thesis, rather than scaling them with \includegraphics options.
48% Tip 2: Any drawings you do should be in scalable vector graphic formats:
49% SVG, PNG, WMF, EPS and then converted to PNG or PDF, so they are scalable in
50% the final PDF as well.
51% Tip 3: Photographs should be cropped and compressed so as not to be too large.
52
53% To create a PDF output that is optimized for double-sided printing:
54%
55% 1) comment-out the \documentclass statement in the preamble below, and
56% un-comment the second \documentclass line.
57%
58% 2) change the value assigned below to the boolean variable
59% "PrintVersion" from "false" to "true".
60
61% --------------------- Start of Document Preamble -----------------------
62
63% Specify the document class, default style attributes, and page dimensions
64% For hyperlinked PDF, suitable for viewing on a computer, use this:
65\documentclass[letterpaper,12pt,titlepage,oneside,final]{book}
66
67% For PDF, suitable for double-sided printing, change the PrintVersion variable below
68% to "true" and use this \documentclass line instead of the one above:
69%\documentclass[letterpaper,12pt,titlepage,openright,twoside,final]{book}
70
71\newcommand{\href}[1]{#1} % does nothing, but defines the command so the
72    % print-optimized version will ignore \href tags (redefined by hyperref pkg).
73
74% This package allows if-then-else control structures.
75\usepackage{ifthen}
76\newboolean{PrintVersion}
77\setboolean{PrintVersion}{false}
78% CHANGE THIS VALUE TO "true" as necessary, to improve printed results for hard copies
79% by overriding some options of the hyperref package below.
80
81%\usepackage{nomencl} % For a nomenclature (optional; available from ctan.org)
82\usepackage{amsmath,amssymb,amstext} % Lots of math symbols and environments
83\usepackage{xcolor}
84\usepackage{graphicx} % For including graphics
85
86% Hyperlinks make it very easy to navigate an electronic document.
87% In addition, this is where you should specify the thesis title
88% and author as they appear in the properties of the PDF document.
89% Use the "hyperref" package
90% N.B. HYPERREF MUST BE THE LAST PACKAGE LOADED; ADD ADDITIONAL PKGS ABOVE
91\usepackage[pagebackref=false]{hyperref} % with basic options
92                % N.B. pagebackref=true provides links back from the References to the body text. This can cause trouble for printing.
93\hypersetup{
94        plainpages=false,       % needed if Roman numbers in frontpages
95        unicode=false,          % non-Latin characters in Acrobat’s bookmarks
96        pdftoolbar=true,        % show Acrobat’s toolbar?
97        pdfmenubar=true,        % show Acrobat’s menu?
98        pdffitwindow=false,     % window fit to page when opened
99        pdfstartview={FitH},    % fits the width of the page to the window
100        pdftitle={The Cforall Scheduler},    % title
101        pdfauthor={Thierry Delisle},    % author
102        pdfsubject={Cforall},   % subject
103        pdfkeywords={Cforall} {concurrency} {scheduling}, % list of keywords
104        pdfnewwindow=true,      % links in new window
105        colorlinks=true,        % false: boxed links; true: colored links
106        linkcolor=blue,         % color of internal links
107        citecolor=green,        % color of links to bibliography
108        filecolor=magenta,      % color of file links
109        urlcolor=cyan           % color of external links
110}
111\ifthenelse{\boolean{PrintVersion}}{   % for improved print quality, change some hyperref options
112\hypersetup{    % override some previously defined hyperref options
113        citecolor=black,
114        filecolor=black,
115        linkcolor=black,
116        urlcolor=black
117}}{} % end of ifthenelse (no else)
118
119\usepackage[automake,toc,abbreviations]{glossaries-extra} % Exception to the rule of hyperref being the last add-on package
120% If glossaries-extra is not in your LaTeX distribution, get it from CTAN (http://ctan.org/pkg/glossaries-extra),
121% although it's supposed to be in both the TeX Live and MikTeX distributions. There are also documentation and
122% installation instructions there.
123\makeatletter
124\newcommand*{\glsplainhyperlink}[2]{%
125  \colorlet{currenttext}{.}% store current text color
126  \colorlet{currentlink}{\@linkcolor}% store current link color
127  \hypersetup{linkcolor=currenttext}% set link color
128  \hyperlink{#1}{#2}%
129  \hypersetup{linkcolor=currentlink}% reset to default
130}
131\let\@glslink\glsplainhyperlink
132\makeatother
133
134\usepackage{csquotes}
135\usepackage{indentfirst} % as any self-respecting frenchman would
136
137% Setting up the page margins...
138\setlength{\textheight}{9in}\setlength{\topmargin}{-0.45in}\setlength{\headsep}{0.25in}
139% uWaterloo thesis requirements specify a minimum of 1 inch (72pt) margin at the
140% top, bottom, and outside page edges and a 1.125 in. (81pt) gutter
141% margin (on binding side). While this is not an issue for electronic
142% viewing, a PDF may be printed, and so we have the same page layout for
143% both printed and electronic versions, we leave the gutter margin in.
144% Set margins to minimum permitted by uWaterloo thesis regulations:
145\setlength{\marginparwidth}{0pt} % width of margin notes
146% N.B. If margin notes are used, you must adjust \textwidth, \marginparwidth
147% and \marginparsep so that the space left between the margin notes and page
148% edge is less than 15 mm (0.6 in.)
149\setlength{\marginparsep}{0pt} % width of space between body text and margin notes
150\setlength{\evensidemargin}{0.125in} % Adds 1/8 in. to binding side of all
151% even-numbered pages when the "twoside" printing option is selected
152\setlength{\oddsidemargin}{0.125in} % Adds 1/8 in. to the left of all pages
153% when "oneside" printing is selected, and to the left of all odd-numbered
154% pages when "twoside" printing is selected
155\setlength{\textwidth}{6.375in} % assuming US letter paper (8.5 in. x 11 in.) and
156% side margins as above
157\raggedbottom
158
159% The following statement specifies the amount of space between
160% paragraphs. Other reasonable specifications are \bigskipamount and \smallskipamount.
161\setlength{\parskip}{\medskipamount}
162
163% The following statement controls the line spacing.  The default
164% spacing corresponds to good typographic conventions and only slight
165% changes (e.g., perhaps "1.2"), if any, should be made.
166\renewcommand{\baselinestretch}{1} % this is the default line space setting
167
168% By default, each chapter will start on a recto (right-hand side)
169% page.  We also force each section of the front pages to start on
170% a recto page by inserting \cleardoublepage commands.
171% In many cases, this will require that the verso page be
172% blank and, while it should be counted, a page number should not be
173% printed.  The following statements ensure a page number is not
174% printed on an otherwise blank verso page.
175\let\origdoublepage\cleardoublepage
176\newcommand{\clearemptydoublepage}{%
177  \clearpage{\pagestyle{empty}\origdoublepage}}
178\let\cleardoublepage\clearemptydoublepage
179
180\newcounter{cit}
181\newcounter{todo}
182
183% \newcommand{\cit}{\textsuperscript{[Citation Needed]}\xspace}
184% \newcommand{\TODO}{{\large\bf\color{red} TODO: }\xspace}
185
186\newcommand\cit[1]{\refstepcounter{cit}\textsuperscript{[Citation Needed]}\xspace\addcontentsline{cit}{subsection}{\thecit~#1}}%
187\newcommand\todo[1]{\refstepcounter{todo}{{\large\bf\color{red} TODO: }\xspace\color{red}{#1}}\addcontentsline{todo}{subsection}{\thetodo~#1}}%
188
189\makeatletter
190\newcommand\citname{cit}
191\newcommand\listcitname{List of missing citations}
192\newcommand\listofcits{%
193  \section*{\listcitname}\@starttoc{cit}}
194\makeatother
195
196\makeatletter
197\newcommand\todoname{todo}
198\newcommand\listtodoname{List of todos}
199\newcommand\listoftodos{%
200  \section*{\listtodoname}\@starttoc{todo}}
201\makeatother
202
203% cfa macros used in the document
204\input{common}
205\CFAStyle                                               % CFA code-style for all languages
206\lstset{basicstyle=\linespread{0.9}\tt}
207
208% glossary of terms to use
209\input{glossary}
210\makeindex
211
212%======================================================================
213%   L O G I C A L    D O C U M E N T -- the content of your thesis
214%======================================================================
215\begin{document}
216
217% For a large document, it is a good idea to divide your thesis
218% into several files, each one containing one chapter.
219% To illustrate this idea, the "front pages" (i.e., title page,
220% declaration, borrowers' page, abstract, acknowledgements,
221% dedication, table of contents, list of tables, list of figures,
222% nomenclature) are contained within the file "uw-ethesis-frontpgs.tex" which is
223% included into the document by the following statement.
224%----------------------------------------------------------------------
225% FRONT MATERIAL
226%----------------------------------------------------------------------
227\input{text/front.tex}
228
229
230%----------------------------------------------------------------------
231% MAIN BODY
232%----------------------------------------------------------------------
233% Because this is a short document, and to reduce the number of files
234% needed for this template, the chapters are not separate
235% documents as suggested above, but you get the idea. If they were
236% separate documents, they would each start with the \chapter command, i.e,
237% do not contain \documentclass or \begin{document} and \end{document} commands.
238\part{Introduction}
239\input{text/intro.tex}
240\input{text/existing.tex}
241\input{text/runtime.tex}
242\part{Design}
243\input{text/core.tex}
244\input{text/practice.tex}
245\input{text/io.tex}
246\part{Evaluation}
247\label{Evaluation}
248\chapter{Theoretical and Existance Proofs}
249\chapter{Micro-Benchmarks}
250\chapter{Larger-Scale applications}
251\part{Conclusion \& Annexes}
252
253%----------------------------------------------------------------------
254% END MATERIAL
255%----------------------------------------------------------------------
256
257% B I B L I O G R A P H Y
258% -----------------------
259
260% The following statement selects the style to use for references.  It controls the sort order of the entries in the bibliography and also the formatting for the in-text labels.
261\bibliographystyle{plain}
262% This specifies the location of the file containing the bibliographic information.
263% It assumes you're using BibTeX (if not, why not?).
264\cleardoublepage % This is needed if the book class is used, to place the anchor in the correct page,
265                 % because the bibliography will start on its own page.
266                 % Use \clearpage instead if the document class uses the "oneside" argument
267\phantomsection  % With hyperref package, enables hyperlinking from the table of contents to bibliography
268% The following statement causes the title "References" to be used for the bibliography section:
269\renewcommand*{\bibname}{References}
270
271% Add the References to the Table of Contents
272\addcontentsline{toc}{chapter}{\textbf{References}}
273
274\bibliography{local,pl}
275% Tip 5: You can create multiple .bib files to organize your references.
276% Just list them all in the \bibliogaphy command, separated by commas (no spaces).
277
278% % The following statement causes the specified references to be added to the bibliography% even if they were not
279% % cited in the text. The asterisk is a wildcard that causes all entries in the bibliographic database to be included (optional).
280% \nocite{*}
281
282% The \appendix statement indicates the beginning of the appendices.
283\appendix
284% Add a title page before the appendices and a line in the Table of Contents
285\chapter*{APPENDICES}
286\addcontentsline{toc}{chapter}{APPENDICES}
287%======================================================================
288\chapter[PDF Plots From Matlab]{Matlab Code for Making a PDF Plot}
289\label{AppendixA}
290% Tip 4: Example of how to get a shorter chapter title for the Table of Contents
291%======================================================================
292\section{Using the GUI}
293Properties of Matab plots can be adjusted from the plot window via a graphical interface. Under the Desktop menu in the Figure window, select the Property Editor. You may also want to check the Plot Browser and Figure Palette for more tools. To adjust properties of the axes, look under the Edit menu and select Axes Properties.
294
295To set the figure size and to save as PDF or other file formats, click the Export Setup button in the figure Property Editor.
296
297\section{From the Command Line}
298All figure properties can also be manipulated from the command line. Here's an example:
299\begin{verbatim}
300x=[0:0.1:pi];
301hold on % Plot multiple traces on one figure
302plot(x,sin(x))
303plot(x,cos(x),'--r')
304plot(x,tan(x),'.-g')
305title('Some Trig Functions Over 0 to \pi') % Note LaTeX markup!
306legend('{\it sin}(x)','{\it cos}(x)','{\it tan}(x)')
307hold off
308set(gca,'Ylim',[-3 3]) % Adjust Y limits of "current axes"
309set(gcf,'Units','inches') % Set figure size units of "current figure"
310set(gcf,'Position',[0,0,6,4]) % Set figure width (6 in.) and height (4 in.)
311cd n:\thesis\plots % Select where to save
312print -dpdf plot.pdf % Save as PDF
313\end{verbatim}
314
315% GLOSSARIES (Lists of definitions, abbreviations, symbols, etc. provided by the glossaries-extra package)
316% -----------------------------
317\printglossary
318\cleardoublepage
319
320% Index
321% -----------------------------
322%\input{thesis.ind}                             % index
323
324\phantomsection
325
326\end{document}
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